chr12:6334108:C>T Detail (hg38) (TNFRSF1A)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr12:6,443,274-6,443,274 View the variant detail on this assembly version. |
| hg38 | chr12:6,334,108-6,334,108 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_001065.3:c.176G>A | NP_001056.1:p.Cys59Tyr |
| Ensemble | ENST00000162749.7:c.176G>A | ENST00000162749.7:p.Cys59Tyr |
| ENST00000440083.7:c.176G>A | ENST00000440083.7:p.Cys59Tyr |
Summary
MGeND
| Clinical significance |
Likely pathogenic
Pathogenic
|
| Variant entry | 2 |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
[No Data.]
Prediction
ClinVar
| Clinical Significance |
Uncertain significance
|
| Review star |  |
| Show details | |
Disease area statistics
MGeND
| Clinical significance | Last evaluated | Condition | Origin | Submission ID | Submitter | Institute | Citation | Comment | Image |
|---|---|---|---|---|---|---|---|---|---|
|
Likely pathogenic
|
other |
germline
|
MGS000001
(TMGS000137) |
Kenjiro Kosaki | Keio University | ||||
|
Pathogenic
|
other |
germline
|
MGS000001
(TMGS000179) |
Kenjiro Kosaki | Keio University |
ClinVar
| Clinical significance | Last evaluated | Review status | Condition | Origin | Links |
|---|---|---|---|---|---|
|
Uncertain significance
|
2017-03-27 | criteria provided, single submitter | TNF receptor-associated periodic fever syndrome (TRAPS) |
germline
not provided
|
Detail |
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.582 | TNF receptor-associated periodic fever syndrome (TRAPS) | NA | CLINVAR | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NM_001065.4(TNFRSF1A):c.176G>A (p.Cys59Tyr) AND TNF receptor-associated periodic fever syndrome (TRA... | ClinVar | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs104895223 dbSNP
- Genome
- hg38
- Position
- chr12:6,334,108-6,334,108
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
Genome browser